miRBase entry: der-mir-275

Stem-loop der-mir-275


Accession
MI0009041
Description
Drosophila erecta der-mir-275 precursor miRNA
Gene family
MIPF0000187; mir-275


Sequence

aagucuccuaccuugcgcgcuaaucagugaccggggcugguuuuuuauauacagUCAGGUACCUGAAGUAGCGCGCGuggugccagacau
..((((..((((.(((((((((.((((..(((..(((((..(......)..))))).)))..))))..))))))))).))))..))))..

Structure
aa    cc    u         -a    ug   gg     gu uu 
  gucu  uacc ugcgcgcua  ucag  acc  ggcug  u  u
  ||||  |||| |||||||||  ||||  |||  |||||  |   
  caga  gugg GCGCGCGAU  AGUC  UGG  CUgac  a  u
ua    cc    u         GA    CA   -A     au ua 


Annotation confidence Not enough data
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Genome context
scaffold_4929: 16344525-16344614 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from der-mir-275
Name Accession Chromosome Start End Strand Confidence




Database links

Mature der-miR-275

Accession MIMAT0008503
Description Drosophila erecta der-miR-275 mature miRNA
Sequence 55 - UCAGGUACCUGAAGUAGCGCGCG - 77
Evidence not_experimental

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218