miRBase entry: der-mir-9b

Stem-loop der-mir-9b


Accession
MI0009045
Description
Drosophila erecta der-mir-9b precursor miRNA
Gene family
MIPF0000014; mir-9


Sequence

ugcauauuauuugcUCUUUGGUGAUUUUAGCUGUAUGguguguauguguuccauagagcuuuauuaccaaaaaccaaaugguuuuugca
((((.((((((((...(((((((((...((((.(((((............))))).))))..)))))))))...))))))))...))))

Structure
    --u        cUC         UUU    G     ugugu 
ugca   auuauuug   UUUGGUGAU   AGCU UAUGg     a
||||   ||||||||   |||||||||   |||| |||||      
acgu   ugguaaac   aaaccauua   ucga auacc     u
    uuu        caa         -uu    g     uugug 


Annotation confidence Not enough data
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Genome context
scaffold_4845: 19768390-19768478 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from der-mir-9b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature der-miR-9b

Accession MIMAT0008507
Description Drosophila erecta der-miR-9b mature miRNA
Sequence 15 - UCUUUGGUGAUUUUAGCUGUAUG - 37
Evidence not_experimental

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218