miRBase entry: der-mir-2c

Stem-loop der-mir-2c


Accession
MI0009081
Description
Drosophila erecta der-mir-2c precursor miRNA
Gene family
MIPF0000049; mir-2


Sequence

ucguaucuuacuuucaaugucaucaaaaagggcugaagaaagauauuucugcauuugaaucgUAUCACAGCCAGCUUUGAUGGGCauugcaaugagcaucga
(((...((((.((.(((((((((((((...(((((......((((((((.......)))..))))).)))))...)))))).))))))).))))))...)))

Structure
   uau    c  u       -      aag     aagaaa     --   ug 
ucg   cuua uu caauguc aucaaa   ggcug      gauau  uuc  c
|||   |||| || ||||||| ||||||   |||||      |||||  |||  a
agc   gagu aa guuaCGG UAGUUU   CCGAC      CUAUg  aag  u
   uac    -  c       G      CGA     -----A     cu   uu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
scaffold_4770: 10769607-10769708 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from der-mir-2c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature der-miR-2c

Accession MIMAT0008540
Description Drosophila erecta der-miR-2c mature miRNA
Sequence 63 - UAUCACAGCCAGCUUUGAUGGGC - 85
Evidence not_experimental

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218