miRBase entry: dgr-mir-100

Stem-loop dgr-mir-100

Accession

MI0009100

Description

Drosophila grimshawi dgr-mir-100 precursor miRNA

Gene family

MIPF0000033; mir-10

Sequence

ccauuaacagaAACCCGUAAAUCCGAACUUGUGcuguuuuuuaucuguuacaagaccggcauuaugggagucugucaaugca
.((((.(((((..(((((((..(((..(((((((.(........).).))))))..)))..)))))))..))))).))))..

Structure

-c    a     AA       AU   AA      - u uuu 
  cauu acaga  CCCGUAA  CCG  CUUGUG c g   u
  |||| |||||  |||||||  |||  |||||| | |    
  guaa ugucu  ggguauu  ggc  gaacau g c   u
ac    c     ga       ac   ca      u u uau

Annotation confidence Not enough data

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Genome context

scaffold_15252: 6427665-6427746 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from dgr-mir-100

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dgr-miR-100

Accession	MIMAT0008557
Description	Drosophila grimshawi dgr-miR-100 mature miRNA
Sequence	12 - AACCCGUAAAUCCGAACUUGUG - 33
Evidence	not_experimental

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218