miRBase entry: dgr-mir-309-1

Stem-loop dgr-mir-309-1


Accession
MI0009118
Description
Drosophila grimshawi dgr-mir-309-1 precursor miRNA
Gene family
MIPF0000140; mir-3


Sequence

auuauauggcaaaccuuguucaguuuugacaacuuuguuucugugcaucaUCACUGGGUGAAGUUUGUCGUAuaau
((((((((((((((.(((((((((..(((..((.........))...)))..))))))))).))))))))))))))

Structure
              c         uu   -ca  uuu 
auuauauggcaaac uuguucagu  uga   ac   g
|||||||||||||| |||||||||  |||   ||   u
uaauAUGCUGUUUG AGUGGGUCA  acu   ug   u
              A         CU   acg  ucu 


Annotation confidence Not enough data
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Genome context
scaffold_15112: 2109142-2109217 [-]
Clustered miRNAs
7 other miRNAs are < 10 kb from dgr-mir-309-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dgr-miR-309

Accession MIMAT0008577
Description Drosophila grimshawi dgr-miR-309 mature miRNA
Sequence 51 - UCACUGGGUGAAGUUUGUCGUA - 72
Evidence not_experimental

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218