miRBase entry: dgr-mir-281-1

Stem-loop dgr-mir-281-1

Accession

MI0009128

Description

Drosophila grimshawi dgr-mir-281-1 precursor miRNA

Gene family

MIPF0000087; mir-46

Sequence

cgaauaagugaauaAAGAGAGCUGUCCGUCGACAGUccaguauaaauuuuaauacUGUCAUGGAAUUGCUCUCUUUGUaugauauucg
((((((.....(((((((((((..(((((.((((((.................)))))))))))...)))))))))))....))))))

Structure

      aguga           -UG     C      ccaguau 
cgaaua     auaAAGAGAGC   UCCGU GACAGU       a
||||||     |||||||||||   ||||| ||||||       a
gcuuau     UGUUUCUCUCG   AGGUA CUGUca       a
      -agua           UUA     -      uaauuuu

Annotation confidence Not enough data

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Genome context

scaffold_15245: 18178200-18178287 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from dgr-mir-281-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dgr-miR-281-1-5p

Accession	MIMAT0008587
Description	Drosophila grimshawi dgr-miR-281-1-5p mature miRNA
Sequence	15 - AAGAGAGCUGUCCGUCGACAGU - 36
Evidence	not_experimental

Mature dgr-miR-281-3p

Accession	MIMAT0008588
Description	Drosophila grimshawi dgr-miR-281-3p mature miRNA
Sequence	56 - UGUCAUGGAAUUGCUCUCUUUGU - 78
Evidence	not_experimental

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218