miRBase entry: dgr-mir-288

Stem-loop dgr-mir-288

Accession

MI0009145

Description

Drosophila grimshawi dgr-mir-288 precursor miRNA

Gene family

MIPF0000223; mir-288

Sequence

ggccgugucguaauuagcugugcagaacguagcuggcgauaauuaaugacguuggucacguuggUUUCAUGUCGAUUUCAUUUCAUGacacggccg
(((((((((((((((.((((.((..(((((.(((((((...........))))))).))))).))..)).)).)))).......))))))))))).

Structure

-           -------    a  -  -u  ag     a       auaa 
 ggccgugucgu       aauu gc ug  gc  aacgu gcuggcg    u
 |||||||||||       |||| || ||  ||  ||||| |||||||    u
 ccggcacaGUA       UUAG UG AC  Ug  uugca ugguugc    a
g           CUUUACU    C  U  UU  -g     c       agua

Annotation confidence Not enough data

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Genome context

scaffold_15126: 6391674-6391769 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from dgr-mir-288

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dgr-miR-288

Accession	MIMAT0008600
Description	Drosophila grimshawi dgr-miR-288 mature miRNA
Sequence	65 - UUUCAUGUCGAUUUCAUUUCAUG - 87
Evidence	not_experimental

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218