miRBase entry: dgr-mir-9c

Stem-loop dgr-mir-9c

Accession

MI0009152

Description

Drosophila grimshawi dgr-mir-9c precursor miRNA

Gene family

MIPF0000014; mir-9

Sequence

auuuuugcuguuUCUUUGGUAUUCUAGCUGUAGAuuguuucuauaucuuguaucaucuaaagcuuuuauaccaaagcuccagcuuaaau
((((..((((...(((((((((...((((.(((((.(...(........)...)))))).))))...)))))))))...))))..))))

Structure

    uu    uuU         UCU    G     u uuu uau 
auuu  gcug   CUUUGGUAU   AGCU UAGAu g   c   a
||||  ||||   |||||||||   |||| ||||| |   |    
uaaa  cgac   gaaaccaua   ucga aucua c   g   u
    uu    cuc         uuu    a     - uau uuc

Annotation confidence Not enough data

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Genome context

scaffold_14978: 830214-830302 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from dgr-mir-9c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dgr-miR-9c

Accession	MIMAT0008606
Description	Drosophila grimshawi dgr-miR-9c mature miRNA
Sequence	13 - UCUUUGGUAUUCUAGCUGUAGA - 34
Evidence	not_experimental

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218