miRBase entry: dgr-mir-13a

Stem-loop dgr-mir-13a


Accession
MI0009168
Description
Drosophila grimshawi dgr-mir-13a precursor miRNA
Gene family
MIPF0000049; mir-2


Sequence

ugcguaacucuucaagggguugugaaauguggguauuaucaagucaUAUCACAGCCAUUUUGAUGAGUuucgug
.(((.(((((.((((((((((((((..(((((.(.......).))))))))))))).)))))).))))).))).

Structure
u   u     u      -        aa     g au 
 gcg aacuc ucaagg gguuguga  ugugg u  u
 ||| ||||| |||||| ||||||||  ||||| |  a
 ugc uUGAG AGUUUU CCGACACU  AUacu a  u
g   u     U      A        --     g ac 


Annotation confidence Not enough data
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Genome context
scaffold_14906: 4357687-4357760 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from dgr-mir-13a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dgr-miR-13a

Accession MIMAT0008617
Description Drosophila grimshawi dgr-miR-13a mature miRNA
Sequence 47 - UAUCACAGCCAUUUUGAUGAGU - 68
Evidence not_experimental

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218