miRBase entry: dgr-mir-281-2

Stem-loop dgr-mir-281-2


Accession
MI0009177
Description
Drosophila grimshawi dgr-mir-281-2 precursor miRNA
Gene family
MIPF0000087; mir-46


Sequence

cgaauagcgaaaugAAGAGAGCUAUCCGUCGACAGUcaaguuauauaccgauuguaauacUGUCAUGGAAUUGCUCUCUUUGUauaauauucg
((((((.....(((((((((((..(((((.((((((...((((((.......)))))))))))))))))...)))))))))))....))))))

Structure
      gcgaa           -UA     C      caa      ua 
cgaaua     augAAGAGAGC   UCCGU GACAGU   guuaua  c
||||||     |||||||||||   ||||| ||||||   ||||||  c
gcuuau     UGUUUCUCUCG   AGGUA CUGUca   uaaugu  g
      -aaua           UUA     -      ---      ua 


Annotation confidence Not enough data
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Genome context
scaffold_15245: 18178390-18178482 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from dgr-mir-281-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dgr-miR-281-3p

Accession MIMAT0008588
Description Drosophila grimshawi dgr-miR-281-3p mature miRNA
Sequence 61 - UGUCAUGGAAUUGCUCUCUUUGU - 83
Evidence not_experimental

Mature dgr-miR-281-2-5p

Accession MIMAT0009184
Description Drosophila grimshawi dgr-miR-281-2-5p mature miRNA
Sequence 15 - AAGAGAGCUAUCCGUCGACAGU - 36
Evidence not_experimental

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218