miRBase entry: dgr-mir-2c

Stem-loop dgr-mir-2c


Accession
MI0009180
Description
Drosophila grimshawi dgr-mir-2c precursor miRNA
Gene family
MIPF0000049; mir-2


Sequence

caugucuuacuuucaaugucaucaaaaagggcugagaaugauauaucugcaauugaaucgUAUCACAGCCAGCUUUGAUGGGCauugcaaagggca
..((((...(((((((((((((((((...(((((.(((((((.((........)).))))).)).)))))...)))))).))))))).))))))))

Structure
ca    uua    -       -      aag     a  -     a  ucu 
  uguc   cuuu caauguc aucaaa   ggcug ga augau ua   g
  ||||   |||| ||||||| ||||||   ||||| || ||||| ||    
  acgg   gaaa guuaCGG UAGUUU   CCGAC CU Ugcua gu   c
--    ---    c       G      CGA     A  A     a  uaa 


Annotation confidence Not enough data
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Genome context
scaffold_14906: 4357884-4357979 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from dgr-mir-2c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dgr-miR-2c

Accession MIMAT0008626
Description Drosophila grimshawi dgr-miR-2c mature miRNA
Sequence 61 - UAUCACAGCCAGCUUUGAUGGGC - 83
Evidence not_experimental

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218