miRBase entry: dse-mir-305

Stem-loop dse-mir-305

Accession

MI0009352

Description

Drosophila sechellia dse-mir-305 precursor miRNA

Gene family

MIPF0000158; mir-305

Sequence

caugucuAUUGUACUUCAUCAGGUGCUCUGgugugucucguaacccggcacauguugaaguacacucaauaug
(((((....(((((((((.((.(((((..((.((........))))))))).)).)))))))))....)))))

Structure

     cuAU         U  G     CU  u  guc 
caugu    UGUACUUCA CA GUGCU  Gg gu   u
|||||    ||||||||| || |||||  || ||    
guaua    acaugaagu gu cacgg  cc ca   c
     acuc         u  a     --  -  aug

Annotation confidence Not enough data

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Genome context

scaffold_3: 2941433-2941505 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from dse-mir-305

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dse-miR-305

Accession	MIMAT0008790
Description	Drosophila sechellia dse-miR-305 mature miRNA
Sequence	8 - AUUGUACUUCAUCAGGUGCUCUG - 30
Evidence	not_experimental

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218