Stem-loop sequence dse-mir-306

Accession MI0009367
Description Drosophila sechellia miR-306 stem-loop
Gene family MIPF0000313; mir-306
Stem-loop 
--      c au   u       uu            ugccu 
  uccacu g  ggc cagguac  agugacucucaa     u
  |||||| |  ||| |||||||  ||||||||||||     u
  ggguga c  ucg guccgug  ucacuggggguu     g
ca      - cg   u       uc            uuaca
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Genome context
Coordinates (dsec_r1.3_FB2010_02) Overlapping transcripts
scaffold_7: 345422-345505 [+]
intergenic
Clustered miRNAs
< 10kb from dse-mir-306
dse-mir-9c scaffold_7: 344907-344998 [+]
dse-mir-306 scaffold_7: 345422-345505 [+]
dse-mir-79 scaffold_7: 345568-345659 [+]
dse-mir-9b scaffold_7: 345756-345844 [+]

Mature sequence dse-miR-306-5p

Accession MIMAT0008804
Previous IDs dse-miR-306
Sequence

14 -  

ucagguacuuagugacucucaa

 - 35

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Evidence by similarity; MI0000414

Mature sequence dse-miR-306-3p

Accession MIMAT0008805
Previous IDs dse-miR-306*
Sequence

51 -  

gggggucacucugugccugugc

 - 72

Get sequence
Evidence by similarity; MI0000414

References

1
PMID:17994087 "Evolution of genes and genomes on the Drosophila phylogeny" Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie Nature. 450:203-218(2007).