miRBase entry: dse-mir-306

Stem-loop dse-mir-306


Accession
MI0009367
Description
Drosophila sechellia dse-mir-306 precursor miRNA
Gene family
MIPF0000313; mir-306


Sequence

uccacucgauggcUCAGGUACUUAGUGACUCUCAAugccuuugacauuuuGGGGGUCACUCUGUGCCUGUGCugccagugggac
((((((.(.((((.(((((((..((((((((((((.............))))))))))))..))))))).))))).))))))..

Structure
--      c a    U       UU            ugccu 
  uccacu g uggc CAGGUAC  AGUGACUCUCAA     u
  |||||| | |||| |||||||  ||||||||||||     u
  ggguga c guCG GUCCGUG  UCACUGGGGGuu     g
ca      c -    U       UC            uuaca 


Annotation confidence Not enough data
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Genome context
scaffold_7: 345422-345505 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from dse-mir-306
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dse-miR-306-5p

Accession MIMAT0008804
Description Drosophila sechellia dse-miR-306-5p mature miRNA
Sequence 14 - UCAGGUACUUAGUGACUCUCAA - 35
Evidence not_experimental

Mature dse-miR-306-3p

Accession MIMAT0008805
Description Drosophila sechellia dse-miR-306-3p mature miRNA
Sequence 51 - GGGGGUCACUCUGUGCCUGUGC - 72
Evidence not_experimental

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218