miRBase entry: dse-mir-13b-1

Stem-loop dse-mir-13b-1


Accession
MI0009380
Description
Drosophila sechellia dse-mir-13b-1 precursor miRNA
Gene family
MIPF0000049; mir-2


Sequence

ccaugucguuaaaauguuugugaacuuauguauucgcaaucaUAUCACAGCCAUUUUGACGAGUuugg
(((..(((((((((((.((((((...((((..........)))))))))).)))))))))))...)))

Structure
   -ug           u      acu    uauu 
cca   ucguuaaaaug uuguga   uaug    c
|||   ||||||||||| ||||||   ||||     
ggu   AGCAGUUUUAC GACACU   AUac    g
   uUG           C      ---    uaac 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
scaffold_0: 10705205-10705272 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from dse-mir-13b-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dse-miR-13b

Accession MIMAT0008816
Description Drosophila sechellia dse-miR-13b mature miRNA
Sequence 43 - UAUCACAGCCAUUUUGACGAGU - 64
Evidence not_experimental

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218