miRBase entry: dsi-mir-34

Stem-loop dsi-mir-34


Accession
MI0009405
Description
Drosophila simulans dsi-mir-34 precursor miRNA
Gene family
MIPF0000039; mir-34

Literature search
1 open access papers mention dsi-mir-34
(1 sentences)

Sequence

uggcuaugcgcuuUGGCAGUGUGGUUAGCUGGUUGuguagccaauuauugccguugacaauucacagccacuaucuucacugccgccgcgacaagc
..(((.(((((..((((((((.((.(((.((((((((..(.((((.......)))).)....))))))))))).)).))))))))..))).)))))

Structure
ug   a  -   uu        U  U   C        --ua c    ua 
  gcu ug cgc  UGGCAGUG GG UAG UGGUUGug    g caau  u
  ||| || |||  |||||||| || ||| ||||||||    | ||||  u
  cga ac gcg  gccgucac uc auc accgacac    c guug  g
--   -  a   cc        u  u   -        uuaa a    cc 


Annotation confidence Not enough data
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Genome context
chr3R: 15449386-15449481 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from dsi-mir-34
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dsi-miR-34

Accession MIMAT0008840
Description Drosophila simulans dsi-miR-34 mature miRNA
Sequence 14 - UGGCAGUGUGGUUAGCUGGUUG - 35
Evidence not_experimental

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218