miRBase entry: dsi-mir-125

Stem-loop dsi-mir-125

Accession

MI0009411

Description

Drosophila simulans dsi-mir-125 precursor miRNA

Gene family

MIPF0000033; mir-10

Sequence

gacaugugcaaauguuuguauggcugauUCCCUGAGACCCUAACUUGUGAcuuuuaauaccaguuucacaaguuuugaucuccgguauuggacgcaaacuugcugauguu
(((((..((((..((((((....(((((..((.((((.(..(((((((((...............)))))))))..).)))).)).)))))..))))))))))..)))))

Structure

     gu    au      augg     UC  U    C CU         cuuuua 
gacau  gcaa  guuugu    cugau  CC GAGA C  AACUUGUGA      a
|||||  ||||  ||||||    |||||  || |||| |  |||||||||      u
uugua  cguu  caaacg    gguua  gg cucu g  uugaacacu      a
     gu    --      --ca     -u  c    a uu         uugacc

Annotation confidence Not enough data

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Genome context

chr2L: 18161226-18161335 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from dsi-mir-125

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dsi-miR-125

Accession	MIMAT0008846
Description	Drosophila simulans dsi-miR-125 mature miRNA
Sequence	29 - UCCCUGAGACCCUAACUUGUGA - 50
Evidence	not_experimental

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218