miRBase entry: dsi-mir-2c

Stem-loop dsi-mir-2c


Accession
MI0009419
Description
Drosophila simulans dsi-mir-2c precursor miRNA
Gene family
MIPF0000049; mir-2


Sequence

ucguaucuuacuuucaaugucaucaaaaagggcugaagaaagauauuucugcauuugaaucgUAUCACAGCCAGCUUUGAUGGGCauugcaaugagcagcga
((((..((((.((.(((((((((((((...(((((......((((((((.......)))..))))).)))))...)))))).))))))).))))))..))))

Structure
    au    c  u       -      aag     aagaaa     --   ug 
ucgu  cuua uu caauguc aucaaa   ggcug      gauau  uuc  c
||||  |||| || ||||||| ||||||   |||||      |||||  |||  a
agcg  gagu aa guuaCGG UAGUUU   CCGAC      CUAUg  aag  u
    ac    -  c       G      CGA     -----A     cu   uu 


Annotation confidence Not enough data
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Genome context
chr3R: 10237611-10237712 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from dsi-mir-2c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dsi-miR-2c

Accession MIMAT0008854
Description Drosophila simulans dsi-miR-2c mature miRNA
Sequence 63 - UAUCACAGCCAGCUUUGAUGGGC - 85
Evidence not_experimental

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218