miRBase entry: dsi-mir-100

Stem-loop dsi-mir-100


Accession
MI0009437
Description
Drosophila simulans dsi-mir-100 precursor miRNA
Gene family
MIPF0000033; mir-10


Sequence

ccauuaacagaAACCCGUAAAUCCGAACUUGUGcuguuuuauaucuguuacaagaccggcauuaugggagucugucaaugca
.((((.(((((..(((((((..(((..(((((((.(........).).))))))..)))..)))))))..))))).))))..

Structure
-c    a     AA       AU   AA      - u uuu 
  cauu acaga  CCCGUAA  CCG  CUUGUG c g   u
  |||| |||||  |||||||  |||  |||||| | |    
  guaa ugucu  ggguauu  ggc  gaacau g c   a
ac    c     ga       ac   ca      u u uau 


Annotation confidence Not enough data
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Genome context
chr2L: 18160342-18160423 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from dsi-mir-100
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dsi-miR-100

Accession MIMAT0008872
Description Drosophila simulans dsi-miR-100 mature miRNA
Sequence 12 - AACCCGUAAAUCCGAACUUGUG - 33
Evidence not_experimental

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218