miRBase entry: dsi-mir-6-2

Stem-loop dsi-mir-6-2


Accession
MI0009473
Description
Drosophila simulans dsi-mir-6-2 precursor miRNA
Gene family
MIPF0000119; mir-6


Sequence

uaaccccAGGGAACUUCUGCUGCUGAUAUAuuauugaaaaacuccuaUAUCACAGUGGCUGUUCUUUUUgguug
(((((..(((((((..((((((.(((((((...............)))))))))))))..)))))))..)))))

Structure
     cc       UU      C       uuauug 
uaacc  AGGGAAC  CUGCUG UGAUAUA      a
|||||  |||||||  |||||| |||||||      a
guugg  UUUCUUG  GGUGAC ACUAUau      a
     UU       UC      -       ccucaa 


Annotation confidence Not enough data
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Genome context
chr2R: 14253809-14253882 [-]
Clustered miRNAs
7 other miRNAs are < 10 kb from dsi-mir-6-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dsi-miR-6-3p

Accession MIMAT0008885
Description Drosophila simulans dsi-miR-6-3p mature miRNA
Sequence 48 - UAUCACAGUGGCUGUUCUUUUU - 69
Evidence experimental
Illumina [2]

Mature dsi-miR-6-5p

Accession MIMAT0015283
Description Drosophila simulans dsi-miR-6-5p mature miRNA
Sequence 8 - AGGGAACUUCUGCUGCUGAUAUA - 30
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 20037610
    Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
    "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
    "Nat Genet (2010) 42:6-9

  2. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218