miRBase entry: dvi-mir-2c

Stem-loop dvi-mir-2c


Accession
MI0009478
Description
Drosophila virilis dvi-mir-2c precursor miRNA
Gene family
MIPF0000049; mir-2

Literature search
1 open access papers mention dvi-mir-2c
(1 sentences)

Sequence

caugucuuacuuucaaugUCAUCAAAAAGGGCUGAGAAUgauauaucugcaauugaaucgUAUCACAGCCAGCUUUGAUGGGCauugcaaagggcaac
..((((...(((((((((((((((((...(((((.(((((((.((........)).))))).)).)))))...)))))).))))))).))))))))..

Structure
ca    uua    -       -      AAG     A  -     a  ucu 
  uguc   cuuu caaugUC AUCAAA   GGCUG GA AUgau ua   g
  ||||   |||| ||||||| ||||||   ||||| || ||||| ||    
  acgg   gaaa guuaCGG UAGUUU   CCGAC CU Ugcua gu   c
ca    ---    c       G      CGA     A  A     a  uaa 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
scaffold_13047: 13335417-13335514 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from dvi-mir-2c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dvi-miR-2c-3p

Accession MIMAT0008910
Description Drosophila virilis dvi-miR-2c-3p mature miRNA
Sequence 61 - UAUCACAGCCAGCUUUGAUGGGC - 83
Evidence experimental
Illumina [2]

Mature dvi-miR-2c-5p

Accession MIMAT0032044
Description Drosophila virilis dvi-miR-2c-5p mature miRNA
Sequence 19 - UCAUCAAAAAGGGCUGAGAAU - 39
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218

  2. PubMed ID: 24448446
    Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
    "Ninova M, Ronshaugen M, Griffiths-Jones S"
    "RNA (2014) 20:360-372