miRBase entry: dvi-mir-12

Stem-loop dvi-mir-12


Accession
MI0009479
Description
Drosophila virilis dvi-mir-12 precursor miRNA
Gene family
MIPF0000181; mir-12


Sequence

uacgguUGAGUAUUACAUCAGGUACUGGUgugccauuuaacuaacaacCAGUACUUAUGUCAUACUACGCcgug
((((((..(((((.((((.((((((((((((............)).)))))))))))))).)))))..))))))

Structure
      UG     U    C          -  gccau 
uacggu  AGUAU ACAU AGGUACUGGU gu     u
||||||  ||||| |||| |||||||||| ||      
gugcCG  UCAUA UGUA UUCAUGACca ca     u
      CA     C    -          a  aucaa 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
scaffold_12970: 2049328-2049401 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from dvi-mir-12
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dvi-miR-12-5p

Accession MIMAT0008911
Description Drosophila virilis dvi-miR-12-5p mature miRNA
Sequence 7 - UGAGUAUUACAUCAGGUACUGGU - 29
Evidence experimental
Illumina [2]

Mature dvi-miR-12-3p

Accession MIMAT0032045
Description Drosophila virilis dvi-miR-12-3p mature miRNA
Sequence 49 - CAGUACUUAUGUCAUACUACGC - 70
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218

  2. PubMed ID: 24448446
    Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
    "Ninova M, Ronshaugen M, Griffiths-Jones S"
    "RNA (2014) 20:360-372