Stem-loop dvi-mir-13a

Accession

MI0009480

Description

Drosophila virilis dvi-mir-13a precursor miRNA

Gene family

MIPF0000049; mir-2

Sequence

ugcguaaCUCUUCAAGGGGUUGUGAAAUGuugccguuaucaagucaUAUCACAGCCAUUUUGAUGAGUuucgug
.(((.(((((.((((((((((((((.(((...............))).)))))))).)))))).))))).))).

Structure

u   u     U      -        A   uugccg 
 gcg aaCUC UCAAGG GGUUGUGA AUG      u
 ||| ||||| |||||| |||||||| |||      u
 ugc uUGAG AGUUUU CCGACACU Uac      a
g   u     U      A        A   ugaacu 

Annotation confidence Not enough data

Genome context

scaffold_13047: 13335637-13335710 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from dvi-mir-13a

Mature dvi-miR-13a-3p

• Accession: MIMAT0008912
• Description: Drosophila virilis dvi-miR-13a-3p mature miRNA
• Sequence: 47 - UAUCACAGCCAUUUUGAUGAGU - 68
• Evidence: experimental ; Illumina [2]

Mature dvi-miR-13a-5p

• Accession: MIMAT0032046
• Description: Drosophila virilis dvi-miR-13a-5p mature miRNA
• Sequence: 8 - CUCUUCAAGGGGUUGUGAAAUG - 29
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17994087
   Evolution of genes and genomes on the Drosophila phylogeny
   "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
   "Nature (2007) 450:203-218


2. PubMed ID: 24448446
   Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
   "Ninova M, Ronshaugen M, Griffiths-Jones S"
   "RNA (2014) 20:360-372