miRBase entry: dvi-mir-306

Stem-loop dvi-mir-306


Accession
MI0009481
Description
Drosophila virilis dvi-mir-306 precursor miRNA
Gene family
MIPF0000313; mir-306


Sequence

ccgcugcUCAGGUACUUAGUGACUCUCAaucaucuauugcuuugcauaccuuGAGGGUCGCUCUGUGCCUGUGCcgccu
..((.((.(((((((..((((((((((((........(((...)))....))))))))))))..))))))).)).))..

Structure
cc  u  U       UU            ucaucuau   u 
  gc gc CAGGUAC  AGUGACUCUCAa        ugc  
  || || |||||||  ||||||||||||        ||| u
  cg CG GUCCGUG  UCGCUGGGAGuu        acg  
uc  c  U       UC            ----ccau   u 


Annotation confidence Not enough data
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Genome context
scaffold_12963: 12863214-12863292 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from dvi-mir-306
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dvi-miR-306-5p

Accession MIMAT0008913
Description Drosophila virilis dvi-miR-306-5p mature miRNA
Sequence 8 - UCAGGUACUUAGUGACUCUCA - 28
Evidence experimental
Illumina [2]

Mature dvi-miR-306-3p

Accession MIMAT0008914
Description Drosophila virilis dvi-miR-306-3p mature miRNA
Sequence 53 - GAGGGUCGCUCUGUGCCUGUGC - 74
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218

  2. PubMed ID: 24448446
    Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
    "Ninova M, Ronshaugen M, Griffiths-Jones S"
    "RNA (2014) 20:360-372