miRBase entry: dvi-mir-318

Stem-loop dvi-mir-318


Accession
MI0009489
Description
Drosophila virilis dvi-mir-318 precursor miRNA
Gene family
MIPF0000259; mir-318


Sequence

uuuaugggauacaccaaguucaguuuugucagauguccaagcaUCACUGGGCUUUGUUUAUCUCAuaag
.((((((((((.((.(((((((((.......(((((....)))))))))))))).)).)))))))))).

Structure
u          c  c         uuuguca     c 
 uuaugggaua ac aaguucagu       gaugu c
 |||||||||| || |||||||||       |||||  
 aauACUCUAU UG UUCGGGUCA       CUacg a
g          U  U         -------     a 


Annotation confidence Not enough data
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Genome context
scaffold_13047: 1194332-1194400 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from dvi-mir-318
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dvi-miR-318

Accession MIMAT0008922
Description Drosophila virilis dvi-miR-318 mature miRNA
Sequence 44 - UCACUGGGCUUUGUUUAUCUCA - 65
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218

  2. PubMed ID: 24448446
    Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
    "Ninova M, Ronshaugen M, Griffiths-Jones S"
    "RNA (2014) 20:360-372