miRBase entry: dvi-mir-287

Stem-loop dvi-mir-287


Accession
MI0009496
Description
Drosophila virilis dvi-mir-287 precursor miRNA
Gene family
MIPF0000224; mir-287


Sequence

gugcauaauguuugaaauuuugcacacauuuacaauaauuguaaaUGUGUUGAAAAUCGUUUGCACaa
(((((.((((......(((((..((((((((((((...))))))))))))..))))))))))))))..

Structure
--     u    uuugaa     gc            u 
  gugca aaug      auuuu  acacauuuacaa  
  ||||| ||||      |||||  |||||||||||| a
  CACGU UUGC      UAAAA  UGUGUaaauguu  
aa     -    ------     GU            a 


Annotation confidence Not enough data
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Genome context
scaffold_12963: 16502565-16502632 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from dvi-mir-287
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dvi-miR-287

Accession MIMAT0008930
Description Drosophila virilis dvi-miR-287 mature miRNA
Sequence 46 - UGUGUUGAAAAUCGUUUGCAC - 66
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218

  2. PubMed ID: 24448446
    Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
    "Ninova M, Ronshaugen M, Griffiths-Jones S"
    "RNA (2014) 20:360-372