miRBase entry: dvi-mir-288

Stem-loop dvi-mir-288


Accession
MI0009519
Description
Drosophila virilis dvi-mir-288 precursor miRNA
Gene family
MIPF0000223; mir-288


Sequence

cagccgcgucguaauuagcugugcacaacguugcuggcgauaauuaaugacuuuggucacguuggUUUCAUGUCGAUUUCAUUUCAUGacacggccg
..((((.(((((((((.((((.((.((((((.(((((..((.....))..))..))).))))))))..)).)).)))).......))))).))))..

Structure
ca    c     -------    a  -  -u  a      u   --  cg  a 
  gccg gucgu       aauu gc ug  gc caacgu gcu  gg  au a
  |||| |||||       |||| || ||  || |||||| |||  ||  || u
  cggc caGUA       UUAG UG AC  Ug guugca ugg  uc  ua u
gc    a     CUUUACU    C  U  UU  -      c   uu  ag  a 


Annotation confidence Not enough data
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Genome context
scaffold_12963: 13472851-13472947 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from dvi-mir-288
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dvi-miR-288

Accession MIMAT0008952
Description Drosophila virilis dvi-miR-288 mature miRNA
Sequence 66 - UUUCAUGUCGAUUUCAUUUCAUG - 88
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218

  2. PubMed ID: 24448446
    Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
    "Ninova M, Ronshaugen M, Griffiths-Jones S"
    "RNA (2014) 20:360-372