miRBase entry: dvi-mir-8

Stem-loop dvi-mir-8


Accession
MI0009522
Description
Drosophila virilis dvi-mir-8 precursor miRNA
Gene family
MIPF0000019; mir-8

Literature search
1 open access papers mention dvi-mir-8
(4 sentences)

Sequence

aaggacaucuguucaCAUCUUACCGGGCAGCAUUAGAuucuugauuuaaauaauucUAAUACUGUCAGGUAAAGAUGUCguccguguccuu
((((((((......((((((((((.(((((.((((((.................)))))).))))).))).))))))).....))))))))

Structure
        cuguuc       -   G     C      uucuuga 
aaggacau      aCAUCUU ACC GGCAG AUUAGA       u
||||||||      ||||||| ||| ||||| ||||||       u
uuccugug      UGUAGAA UGG CUGUC UAAUcu       u
        -ccugC       A   A     A      uaauaaa 


Annotation confidence Not enough data
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Genome context
scaffold_12875: 10672395-10672485 [-]

Database links

Mature dvi-miR-8-3p

Accession MIMAT0008954
Description Drosophila virilis dvi-miR-8-3p mature miRNA
Sequence 57 - UAAUACUGUCAGGUAAAGAUGUC - 79
Evidence experimental
Illumina [2]

Mature dvi-miR-8-5p

Accession MIMAT0032077
Description Drosophila virilis dvi-miR-8-5p mature miRNA
Sequence 16 - CAUCUUACCGGGCAGCAUUAGA - 37
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218

  2. PubMed ID: 24448446
    Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
    "Ninova M, Ronshaugen M, Griffiths-Jones S"
    "RNA (2014) 20:360-372