miRBase entry: dvi-mir-4

Stem-loop dvi-mir-4

Accession

MI0009524

Description

Drosophila virilis dvi-mir-4 precursor miRNA

Gene family

MIPF0000305; mir-4

Sequence

uugcaauuaguuUCUUUGGUCGUCCAGCCUUAGGUGauuucucugaucAUAAAGCUAGACAACCAUUGAaguucguugugg
..(((((.((((((..((((.(((.(((.((..((((((.....)))))).))))).))).))))..)))))).)))))..

Structure

uu     u      UU    C   C   C  AG      u 
  gcaau aguuUC  UGGU GUC AGC UU  GUGauu c
  ||||| ||||||  |||| ||| ||| ||  |||||| u
  uguug uugaAG  ACCA CAG UCG AA  UAcuag c
gg     c      UU    A   A   -  -A      u

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

scaffold_12875: 4112313-4112393 [+]

Clustered miRNAs

7 other miRNAs are < 10 kb from dvi-mir-4

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dvi-miR-4-3p

Accession	MIMAT0008956
Description	Drosophila virilis dvi-miR-4-3p mature miRNA
Sequence	49 - AUAAAGCUAGACAACCAUUGA - 69
Evidence	experimental Illumina [2]

Mature dvi-miR-4-5p

Accession	MIMAT0032079
Description	Drosophila virilis dvi-miR-4-5p mature miRNA
Sequence	13 - UCUUUGGUCGUCCAGCCUUAGGUG - 36
Evidence	experimental Illumina [2]

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218

PubMed ID: 24448446
Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
"Ninova M, Ronshaugen M, Griffiths-Jones S"
"RNA (2014) 20:360-372