Stem-loop dvi-mir-309

Accession

MI0009526

Description

Drosophila virilis dvi-mir-309 precursor miRNA

Gene family

MIPF0000140; mir-3

Literature search

2 open access papers mention dvi-mir-309
(15 sentences)

Sequence

auuauaUGGUAAACUUUGUUCAGUUUUGccaggcucuuuuugugcgcaUCACUGGGUGAAGUUUGUCGUAuaau
((((((((((((((((((((((((..(((...((.(.....).)))))..))))))))))))))))))))))))

Structure

                        UU   cag  u u 
auuauaUGGUAAACUUUGUUCAGU  UGc   gc c u
||||||||||||||||||||||||  |||   || | u
uaauAUGCUGUUUGAAGUGGGUCA  acg   cg g u
                        CU   ---  u u 

Annotation confidence Not enough data

Genome context

scaffold_12875: 4111809-4111882 [+]

Clustered miRNAs

7 other miRNAs are < 10 kb from dvi-mir-309

Mature dvi-miR-309-3p

• Accession: MIMAT0008958
• Description: Drosophila virilis dvi-miR-309-3p mature miRNA
• Sequence: 49 - UCACUGGGUGAAGUUUGUCGUA - 70
• Evidence: experimental ; Illumina [2]

Mature dvi-miR-309-5p

• Accession: MIMAT0032081
• Description: Drosophila virilis dvi-miR-309-5p mature miRNA
• Sequence: 7 - UGGUAAACUUUGUUCAGUUUUG - 28
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17994087
   Evolution of genes and genomes on the Drosophila phylogeny
   "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
   "Nature (2007) 450:203-218


2. PubMed ID: 24448446
   Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
   "Ninova M, Ronshaugen M, Griffiths-Jones S"
   "RNA (2014) 20:360-372