Stem-loop dvi-mir-275

Accession

MI0009538

Description

Drosophila virilis dvi-mir-275 precursor miRNA

Gene family

MIPF0000187; mir-275

Sequence

gucuuuuaccgugCGCGCUAAUCAGUGACCGGGGCUgguuuugguuaucccacagUCAGGUACCUGAAGUAGCGCGCGugguggccagacgu
((((.(((((((((((((((.((((..(((..(((((....(((.....)))))))).)))..))))..)))))))))))))))..))))..

Structure

--    -u               -A    UG   GG     guuu   u 
  gucu  uuaccgugCGCGCUA  UCAG  ACC  GGCUg    ugg u
  ||||  |||||||||||||||  ||||  |||  |||||    ||| a
  caga  ggugguGCGCGCGAU  AGUC  UGG  CUgac    acc u
ug    cc               GA    CA   -A     ----   c 

Annotation confidence Not enough data

Genome context

scaffold_12963: 15419968-15420059 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from dvi-mir-275

Mature dvi-miR-275-3p

• Accession: MIMAT0008970
• Description: Drosophila virilis dvi-miR-275-3p mature miRNA
• Sequence: 56 - UCAGGUACCUGAAGUAGCGCGCG - 78
• Evidence: experimental ; Illumina [2]

Mature dvi-miR-275-5p

• Accession: MIMAT0032091
• Description: Drosophila virilis dvi-miR-275-5p mature miRNA
• Sequence: 14 - CGCGCUAAUCAGUGACCGGGGCU - 36
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17994087
   Evolution of genes and genomes on the Drosophila phylogeny
   "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
   "Nature (2007) 450:203-218


2. PubMed ID: 24448446
   Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
   "Ninova M, Ronshaugen M, Griffiths-Jones S"
   "RNA (2014) 20:360-372