miRBase entry: dvi-mir-100

Stem-loop dvi-mir-100

Accession

MI0009541

Description

Drosophila virilis dvi-mir-100 precursor miRNA

Gene family

MIPF0000033; mir-10

Sequence

ccauuaacagaAACCCGUAAAUCCGAACUUGugcuguuuuauaucuguuaCAAGACCGGCAUUAUGGGAGUCugucaaugca
.((((.(((((..(((((((..(((..(((((((.(........).).))))))..)))..)))))))..))))).))))..

Structure

-c    a     AA       AU   AA      - u uuu 
  cauu acaga  CCCGUAA  CCG  CUUGug c g   u
  |||| |||||  |||||||  |||  |||||| | |    
  guaa uguCU  GGGUAUU  GGC  GAACau g c   a
ac    c     GA       AC   CA      u u uau

Annotation confidence Not enough data

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Genome context

scaffold_12963: 18449845-18449926 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from dvi-mir-100

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dvi-miR-100-5p

Accession	MIMAT0008973
Description	Drosophila virilis dvi-miR-100-5p mature miRNA
Sequence	12 - AACCCGUAAAUCCGAACUUG - 31
Evidence	experimental Illumina [2]

Mature dvi-miR-100-3p

Accession	MIMAT0032093
Description	Drosophila virilis dvi-miR-100-3p mature miRNA
Sequence	51 - CAAGACCGGCAUUAUGGGAGUC - 72
Evidence	experimental Illumina [2]

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218

PubMed ID: 24448446
Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
"Ninova M, Ronshaugen M, Griffiths-Jones S"
"RNA (2014) 20:360-372