miRBase entry: dya-mir-100

Stem-loop dya-mir-100


Accession
MI0009633
Description
Drosophila yakuba dya-mir-100 precursor miRNA
Gene family
MIPF0000033; mir-10


Sequence

ccauuaacagaAACCCGUAAAUCCGAACUUGUGcuguuuuauaucuguuacaagaccggcauuaugggagucugucaaugca
.((((.(((((..(((((((..(((..(((((((.(........).).))))))..)))..)))))))..))))).))))..

Structure
-c    a     AA       AU   AA      - u uuu 
  cauu acaga  CCCGUAA  CCG  CUUGUG c g   u
  |||| |||||  |||||||  |||  |||||| | |    
  guaa ugucu  ggguauu  ggc  gaacau g c   a
ac    c     ga       ac   ca      u u uau 


Annotation confidence Not enough data
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Genome context
chr2R: 4988220-4988301 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from dya-mir-100
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dya-miR-100

Accession MIMAT0009059
Description Drosophila yakuba dya-miR-100 mature miRNA
Sequence 12 - AACCCGUAAAUCCGAACUUGUG - 33
Evidence not_experimental

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218