miRBase entry: dya-mir-5

Stem-loop dya-mir-5


Accession
MI0009676
Description
Drosophila yakuba dya-mir-5 precursor miRNA
Gene family
MIPF0000309; mir-5


Sequence

uaAAAGGAACGAUCGUUGUGAUAUGcguuauucccuaacauaucacagugauuuuccuuuauaa
..(((((((.(((((((((((((((.............))))))))))))))))))))))....

Structure
--ua       C               cguua 
    AAAGGAA GAUCGUUGUGAUAUG     u
    ||||||| |||||||||||||||     u
    uuuccuu uuagugacacuauac     c
aaua       -               aaucc 


Annotation confidence Not enough data
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Genome context
chr2R: 13624062-13624125 [+]
Clustered miRNAs
7 other miRNAs are < 10 kb from dya-mir-5
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dya-miR-5

Accession MIMAT0009101
Description Drosophila yakuba dya-miR-5 mature miRNA
Sequence 3 - AAAGGAACGAUCGUUGUGAUAUG - 25
Evidence not_experimental

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218