miRBase entry: pta-MIR1312

Stem-loop pta-MIR1312


Accession
MI0009709
Description
Pinus taeda pta-MIR1312 precursor miRNA
Gene family
MIPF0001466; MIR1312


Sequence

ucccccaaaacauccauaucgcuauaucucuccuaauuagguugaaucgaaacagccaacacuuucaguugauucaaauauuaguuuguuucugcauaaUUUGGAGAGAAAAUGGCGACAUagauguuuucggcgau
((.((.((((((((.((.(((((((.(((((((.((((((((((........)))))..........((.((..(((((....)))))..)).)).))))).)))))))..))))))).)).)))))))).)).)).

Structure
-  c  c        c  a       -a       u     gguugaaucgaaacagccaacacuuuca  u  uu     a 
 uc cc aaaacauc au ucgcuau  ucucucc aauua                            gu ga  caaau u
 || || |||||||| || |||||||  ||||||| |||||                            || ||  |||||  
 ag gg uuuuguag UA AGCGGUA  AGAGAGG UUaau                            cg cu  guuug u
u  c  c        a  C       AA       U     ---------------------------a  u  uu     a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature pta-miR1312

Accession MIMAT0009129
Description Pinus taeda pta-miR1312 mature miRNA
Sequence 100 - UUUGGAGAGAAAAUGGCGACAU - 121
Evidence experimental
454 [1]

References

  1. PubMed ID: 18323537
    Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa
    "Morin RD, Aksay G, Dolgosheina E, Ebhardt HA, Magrini V, Mardis ER, Sahinalp SC, Unrau PJ"
    "Genome Res (2008) 18:571-584