miRBase entry: pta-MIR1313

Stem-loop pta-MIR1313


Accession
MI0009710
Description
Pinus taeda pta-MIR1313 precursor miRNA
Gene family
MIPF0001611; MIR1313


Sequence

augguauucUACCACUGAAAUUAUUGUUCGaaauaacaccugcaauucauggauguauacugccgugguaugguauccuacaguguauccccagucuaaccuaguugcaggguugcaacacauggcauggugggggaucuacugggcaauaaccaaguugcauggguguauuuauccaacaauaauuucaguggaagacuuccaucgau
((((...(((.(((((((((((((((((.((((..((((((((((((..(((.(((....((((..((........))..(((((.((((((..((...((..((((((....))))))....))...))..)))))).)))))))))))).)))))))))..))))))..)).)).))))))))))))))))).)))...))))....

Structure
----    uau   A                 C  -  ua      --      ca   a   auac    gugguaugguauccua     u      ag  uaa  --ua      g 
    augg   ucU CCACUGAAAUUAUUGUU Ga aa  acaccu  gcaauu  ugg ugu    ugcc                cagug aucccc  uc   cc    guugca g
    ||||   ||| ||||||||||||||||| || ||  ||||||  ||||||  ||| |||    ||||                ||||| ||||||  ||   ||    ||||||  
    uacc   aga ggugacuuuaauaacaa cu uu  uguggg  cguuga  acc aua    acgg                gucau uagggg  gg   gg    caacgu g
uagc    uuc   a                 c  a  ua      ua      --   a   ----    ----------------     c      gu  uac  uaca      u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature pta-miR1313

Accession MIMAT0009130
Description Pinus taeda pta-miR1313 mature miRNA
Sequence 10 - UACCACUGAAAUUAUUGUUCG - 30
Evidence experimental
454 [1]

References

  1. PubMed ID: 18323537
    Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa
    "Morin RD, Aksay G, Dolgosheina E, Ebhardt HA, Magrini V, Mardis ER, Sahinalp SC, Unrau PJ"
    "Genome Res (2008) 18:571-584