Stem-loop pta-MIR1314

Accession

MI0009711

Description

Pinus taeda pta-MIR1314 precursor miRNA

Gene family

MIPF0001609; MIR1314

Sequence

aauuccaauuccaauugauaacauguuaguuagcugaagagauucuucaacauuagaggccaauauagaauaauauucuuauucuuaaUCGGCCUUGAAUGUUAGGAGAAcguuuuccucuaccuaagcaugcuaucucaaaggaguuuaaggagugg
.(((((((((((....((((.((((((((.(((..(((((..((((((((((((.((((((.((..(((((((.....)))))))..)).)))))).)))))).))))))..)))))..))).)).)))))).)))).....))))))...)))))..

Structure

-a     ---      -aauu    a      -  u   cu     ga      -      a      a  au       u 
  auucc   aauucc     gaua cauguu ag uag  gaaga  uucuuc aacauu gaggcc au  agaauaa a
  |||||   ||||||     |||| |||||| || |||  |||||  |||||| |||||| |||||| ||  ||||||| u
  ugagg   uugagg     cuau guacga uc auc  cuuuu  AAGAGG UUGUAA UUCCGG Ua  ucuuauu u
gg     aau      aaacu    c      a  c   uc     gc      A      G      C  au       c 

Annotation confidence Not enough data

Genome context

Unknown

Mature pta-miR1314

• Accession: MIMAT0009131
• Description: Pinus taeda pta-miR1314 mature miRNA
• Sequence: 89 - UCGGCCUUGAAUGUUAGGAGAA - 110
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 18323537
   Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa
   "Morin RD, Aksay G, Dolgosheina E, Ebhardt HA, Magrini V, Mardis ER, Sahinalp SC, Unrau PJ"
   "Genome Res (2008) 18:571-584