miRBase entry: pta-MIR1315

Stem-loop pta-MIR1315


Accession
MI0009712
Description
Pinus taeda pta-MIR1315 precursor miRNA


Sequence

gucaaggauuuggaggcccgucagguucccaaccgaguccgggaccaucugcagacuggagcaccagcccaggacaaggcuuuggaggccggucagguucccaaccgaguccgggaccaucugcagacuggagcacucuuccaggucaaggauuUGGAGGCCUGUCAGGUUCCCAaccgaguccgggacuau
(((..((((((((.((((.(.((((..((...((((((((..((((.((((((((((((....))))(((.((((..((..((((.((((.....)))).))))))..)))))))....)))))))).(((((.....)))))))))..)))))))).)))))).).))..))...))))))))..)))...

Structure
---   aa        --a  --  c u    uu  caa        gg    ---------------a        cuggagcaccag   a    aa  cu    a    g 
   guc  ggauuugg   gg  cc g cagg  cc   ccgagucc  gacc                ucugcaga            ccc ggac  gg  uugg ggcc g
   |||  ||||||||   ||  || | ||||  ||   ||||||||  ||||                ||||||||            ||| ||||  ||  |||| |||| u
   cag  ccugagcc   CC  GG C GUCC  GG   GGUuuagg  cugg                agacgucu            ggg ccug  cc  aacc uugg c
uau   gg        aAC  UU  A U    --  --A        aa    accuucucacgagguc        --------acca   -    ag  --    c    a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature pta-miR1315

Accession MIMAT0009132
Description Pinus taeda pta-miR1315 mature miRNA
Sequence 155 - UGGAGGCCUGUCAGGUUCCCA - 175
Evidence experimental
454 [1]

References

  1. PubMed ID: 18323537
    Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa
    "Morin RD, Aksay G, Dolgosheina E, Ebhardt HA, Magrini V, Mardis ER, Sahinalp SC, Unrau PJ"
    "Genome Res (2008) 18:571-584