Stem-loop osa-MIR1319a

Accession

MI0009716

Description

Oryza sativa osa-MIR1319a precursor miRNA

Literature search

2 open access papers mention osa-MIR1319a
(2 sentences)

Sequence

13135 reads, 48.0 reads per million, 141 experiments

uaugggugucgguuuuuaagaaaaaaccggcaucuguaauAUAUUAUAGGUGUCGGUUAAUUAAAAaccgagaccuauaauauauuauaagugccgguuuuUUUAAAACCGACACCUAUcu
.(((((((((((((((...((((((((((((((.(((((((((((((((((.((((((.......)))))).))))))))))))))))).)))))))))))))))))))))))))))))..

Structure

-u               uaa              c                 G      AA 
  augggugucgguuuu   gaaaaaaccggcau uguaauAUAUUAUAGGU UCGGUU  U
  |||||||||||||||   |||||||||||||| ||||||||||||||||| ||||||  U
  UAUCCACAGCCAAAA   UUUuuuuggccgug auauuauauaauaucca agccaA  A
uc               ---              a                 g      AA 

Annotation confidence Low

Genome context

11: 702071-702191 [-]

Mature osa-miR1319a-5p

• Accession: MIMAT0009136
• Description: Oryza sativa osa-miR1319a-5p mature miRNA
• Sequence: 41 - AUAUUAUAGGUGUCGGUUAAUUAAAA - 66
• Evidence: experimental ; 454 [1]

Mature osa-miR1319a-3p

• Accession: MIMAT0056099
• Description: Oryza sativa osa-miR1319a-3p mature miRNA
• Sequence: 102 - UUUAAAACCGACACCUAU - 119
• Evidence: experimental ; unknown

References

1. PubMed ID: 18323537
   Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa
   "Morin RD, Aksay G, Dolgosheina E, Ebhardt HA, Magrini V, Mardis ER, Sahinalp SC, Unrau PJ"
   "Genome Res (2008) 18:571-584