Stem-loop osa-MIR1319a

Accession

MI0009716

Description

Oryza sativa osa-MIR1319a precursor miRNA

Gene family

MIPF0001448; MIR1319

Literature search

2 open access papers mention osa-MIR1319a
(2 sentences)

Sequence

45 reads, 42 reads per million, 2 experiments

uaugggugucgguuuuuaagaaaaAACCGGCAUCUGUAAUAUAUUAUAggugucgguuaauuaaaaaccgagaccuauaauauauuauaagugccgguuuuuuuaaaaccgacaccuaucu
.(((((((((((((((...((((((((((((((.(((((((((((((((((.((((((.......)))))).))))))))))))))))).)))))))))))))))))))))))))))))..

Structure

-u               uaa              C                 g      aa 
  augggugucgguuuu   gaaaaAACCGGCAU UGUAAUAUAUUAUAggu ucgguu  u
  |||||||||||||||   |||||||||||||| ||||||||||||||||| ||||||  u
  uauccacagccaaaa   uuuuuuuggccgug auauuauauaauaucca agccaa  a
uc               ---              a                 g      aa 

Annotation confidence Not enough data

Genome context

Chr11: 702071-702191 [-]

Mature osa-miR1319a

• Accession: MIMAT0009136
• Description: Oryza sativa osa-miR1319a mature miRNA
• Sequence: 25 - AACCGGCAUCUGUAAUAUAUUAUA - 48
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 18323537
   Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa
   "Morin RD, Aksay G, Dolgosheina E, Ebhardt HA, Magrini V, Mardis ER, Sahinalp SC, Unrau PJ"
   "Genome Res (2008) 18:571-584