miRBase entry: bta-mir-105a

Stem-loop bta-mir-105a


Accession
MI0009723
Description
Bos taurus bta-mir-105a precursor miRNA
Gene family
MIPF0000074; mir-105

Literature search
1 open access papers mention bta-mir-105a
(1 sentences)

Sequence

84 reads, 10 reads per million, 42 experiments
ugugcaucguagUCAAAUGCUCAGACUCCUGUGGUggcugcucaugcaccacggauguuugagcaugugcuacggugucua
...(((((((((.((.((((((((((..((((((((..........))))))))..)))))))))).)))))))))))...

Structure
ugu         U  A          UC        gcug 
   gcaucguag CA AUGCUCAGAC  CUGUGGUg    c
   ||||||||| || ||||||||||  ||||||||     
   uguggcauc gu uacgaguuug  ggcaccac    u
auc         -  g          ua        guac 


Annotation confidence Not enough data
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Genome context
chrX: 35236061-35236141 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from bta-mir-105a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-105a

Accession MIMAT0009217
Description Bos taurus bta-miR-105a mature miRNA
Sequence 13 - UCAAAUGCUCAGACUCCUGUGGU - 35
Evidence not_experimental

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39

  2. PubMed ID: 18945293
    Annotation of 390 bovine miRNA genes by sequence similarity with other species
    "Strozzi F, Mazza R, Malinverni R, Williams JL"
    "Anim Genet (2009) 40:125