miRBase entry: bta-mir-124a-2

Stem-loop bta-mir-124a-2


Accession
MI0009725
Description
Bos taurus bta-mir-124a-2 precursor miRNA
Gene family
MIPF0000021; mir-124

Literature search
8 open access papers mention bta-mir-124a-2
(10 sentences)

Sequence

179 reads, 13 reads per million, 51 experiments
aucaagaucagacucugcccuccguguucacagcggaccuugauuuaaugucauacaauUAAGGCACGCGGUGAAUGCCAAGagcggagccuacaggcggcugcacuugaa
.(((((..(((..(((((.((..((((((((.(((..((((((((...........))))))))..))).))))))))..)).)))))(((....)))..)))..))))).

Structure
a     au   ----------ac     c  cc        a   ga        uaau 
 ucaag  cag            ucugc cu  guguucac gcg  ccuugauu    g
 |||||  |||            ||||| ||  |||||||| |||  ||||||||    u
 aguuc  guc            aggcg GA  CGUAAGUG CGC  GGAAUuaa    c
a     ac   ggcggacauccg     a  AC        G   AC        caua 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
This sequence was mis-named bta-mir-104-2 in [1].

Genome context
chr14: 31015073-31015183 [+]

Database links

Mature bta-miR-124a

Accession MIMAT0003811
Description Bos taurus bta-miR-124a mature miRNA
Sequence 60 - UAAGGCACGCGGUGAAUGCCAAG - 82
Evidence experimental
cloned [2,4], Array [3], qRT-PCR [3]

References

  1. PubMed ID: 17105755
    Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
    "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
    "Physiol Genomics (2007) 29:35-43

  2. PubMed ID: 19170227
    Identification and expression profiling of microRNAs during bovine oocyte maturation using heterologous approach
    "Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker M"
    "Mol Reprod Dev (2009) 76:665-677

  3. PubMed ID: 19758457
    Characterization of bovine miRNAs by sequencing and bioinformatics analysis
    Jin W, Grant JR, Stothard P, Moore SS, Guan LL
    BMC Mol Biol (2009) 10:90

  4. PubMed ID: 18945293
    Annotation of 390 bovine miRNA genes by sequence similarity with other species
    "Strozzi F, Mazza R, Malinverni R, Williams JL"
    "Anim Genet (2009) 40:125