miRBase entry: bta-mir-153-1

Stem-loop bta-mir-153-1


Accession
MI0009749
Description
Bos taurus bta-mir-153-1 precursor miRNA
Gene family
MIPF0000050; mir-153

Literature search
5 open access papers mention bta-mir-153-1
(7 sentences)

Sequence

813 reads, 14 reads per million, 61 experiments
cucacggcugccagcgucauuuuugugaucugcagcuaguauucucacuccagUUGCAUAGUCACAAAAGUGAUCacuggcagguguggc
.(((((.(((((((.((((((((((((((.((((((((((......)))..)))))))..))))))))))))).).))))))).))))).

Structure
c     g       c -             -c       --   au 
 ucacg cugccag g ucauuuuugugau  ugcagcu  agu  u
 ||||| ||||||| | |||||||||||||  |||||||  |||   
 ggugu gacgguc C AGUGAAAACACUG  ACGUUga  uca  c
c     g       a U             AU       cc   cu 


Annotation confidence Not enough data
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Genome context
chr2: 108346811-108346900 [-]

Database links

Mature bta-miR-153

Accession MIMAT0009239
Description Bos taurus bta-miR-153 mature miRNA
Sequence 54 - UUGCAUAGUCACAAAAGUGAUC - 75
Evidence experimental
Array [3], qRT-PCR [3]

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39

  2. PubMed ID: 19170227
    Identification and expression profiling of microRNAs during bovine oocyte maturation using heterologous approach
    "Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker M"
    "Mol Reprod Dev (2009) 76:665-677

  3. PubMed ID: 18945293
    Annotation of 390 bovine miRNA genes by sequence similarity with other species
    "Strozzi F, Mazza R, Malinverni R, Williams JL"
    "Anim Genet (2009) 40:125