Stem-loop bta-mir-183

Accession

MI0009756

Description

Bos taurus bta-mir-183 precursor miRNA mir-183

Gene
family

RF00663; mir-183

Literature search

98 open access papers mention bta-mir-183
(482 sentences)

Sequence

236843 reads, 106.0 reads per million, 313 experiments

cugugUAUGGCACUGGUAGAAUUCACUGugaacagucucggucagUGAAUUACCGAAGGGCCAUAAAcag
((((.((((((.((((((..(((((((((((......)))..))))))))))))..)).)))))).))))

Structure

    g      A  --    GA        --   ac 
cugu UAUGGC CU  GGUA  AUUCACUG  uga  a
|||| |||||| ||  ||||  ||||||||  |||   
gacA AUACCG GA  CCAU  UAAGUgac  gcu  g
    A      G  AG    --        ug   cu 

Annotation confidence High

Genome context

4: 93596158-93596227 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from bta-mir-183

Mature bta-miR-183-5p

• Accession: MIMAT0009245
• Description: Bos taurus bta-miR-183-5p mature miRNA
• Sequence: 6 - UAUGGCACUGGUAGAAUUCACUG - 28
• Evidence: not_experimental

Mature bta-miR-183-3p

• Accession: MIMAT0060992
• Description: Bos taurus bta-miR-183-3p mature miRNA
• Sequence: 46 - UGAAUUACCGAAGGGCCAUAAA - 67
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125