Stem-loop sequence bta-mir-188

Accession

MI0009760 (change log)

Description

Bos taurus miR-188 stem-loop

Gene family

MIPF0000113; mir-188

Literature search

3 open access papers mention bta-mir-188
(4 sentences)

Stem-loop

   u    -  uc   ca  uc         gu      -ugag u 
5'  gcuc cc  ucu  ca  ccuugcaug  ggaggg     c u
    |||| ||  |||  ||  |||||||||  ||||||     | u
3'  cgag gg  agg  gu  gggacguac  ccuccc     g c
   c    u  -u   ac  uu         ac      caaaa u 

Deep sequencing

474 reads, 2.9 reads per million, 69 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chrX: 93935739-93935824 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bta-mir-188

• bta-mir-532: chrX: 93935413-93935498 [+]
• bta-mir-188: chrX: 93935739-93935824 [+]
• bta-mir-502a-2: chrX: 93942730-93942819 [+]

Database links

• EntrezGene:MIR188
• miRBase Tracker:MI0009760

Mature sequence bta-miR-188

• Accession: MIMAT0009249
• Sequence: 15 - caucccuugcaugguggagggu - 36
• Deep sequencing: 407 reads, 66 experiments
• Evidence: experimental; Array [3], qRT-PCR [3]
• Predicted targets:
  • TargetScanVert:bta-miR-188

References

1. PMID:18215311 "miRNAminer: a tool for homologous microRNA gene search" Artzi S, Kiezun A, Shomron N BMC Bioinformatics. 9:39(2008).
2. PMID:18945293 "Annotation of 390 bovine miRNA genes by sequence similarity with other species" Strozzi F, Mazza R, Malinverni R, Williams JL Anim Genet. 40:125(2009).
3. PMID:19170227 "Identification and expression profiling of microRNAs during bovine oocyte maturation using heterologous approach" Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker M Mol Reprod Dev. 76:665-677(2009).