miRBase entry: bta-mir-190b

Stem-loop bta-mir-190b


Accession
MI0009763
Description
Bos taurus bta-mir-190b precursor miRNA
Gene family
MIPF0000076; mir-190

Literature search
2 open access papers mention bta-mir-190b
(9 sentences)

Sequence

106 reads, 5 reads per million, 45 experiments
ugcuucugugUGAUAUGUUUGAUAUUGGGUUguuuaauuaggaaccaacuaaaugucaaacauauucuuacagcaguag
((((.(((((.(((((((((((((((.((((((((......))).))))).)))))))))))))))..))))).)))).

Structure
-    u     -U               G     -   aa 
 ugcu cugug  GAUAUGUUUGAUAUU GGUUg uuu  u
 |||| |||||  ||||||||||||||| ||||| |||   
 auga gacau  uuauacaaacuguaa ucaac aag  u
g    c     uc               a     c   ga 


Annotation confidence Not enough data
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Genome context
chr3: 16531292-16531370 [+]

Database links

Mature bta-miR-190b

Accession MIMAT0009252
Description Bos taurus bta-miR-190b mature miRNA
Sequence 11 - UGAUAUGUUUGAUAUUGGGUU - 31
Evidence experimental
Array [3], qRT-PCR [3]

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39

  2. PubMed ID: 19170227
    Identification and expression profiling of microRNAs during bovine oocyte maturation using heterologous approach
    "Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker M"
    "Mol Reprod Dev (2009) 76:665-677

  3. PubMed ID: 18945293
    Annotation of 390 bovine miRNA genes by sequence similarity with other species
    "Strozzi F, Mazza R, Malinverni R, Williams JL"
    "Anim Genet (2009) 40:125