Stem-loop sequence bta-mir-196a-1

Accession

MI0009767 (change log)

Description

Bos taurus miR-196a-1 stem-loop

Gene family

MIPF0000031; mir-196

Literature search

21 open access papers mention bta-mir-196a-1
(105 sentences)

Stem-loop

   u  a ugg       ga    a ua   a    c         - gc u  a 
5'  ga c   aacugcu  guga u  ggu guuu auguuguug g  c gg u
    || |   |||||||  |||| |  ||| |||| ||||||||| |  | ||  
3'  cu g   uugacgg  cacu a  cca caaa uacagcaac c  g uc u
   c  c uca       --    c gc   c    u         a aa -  u 

Deep sequencing

15862 reads, 135 reads per million, 55 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chr19: 38661613-38661714 [+]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:MIR196A-1
• RNAcentral:URS000075A670_9913
• miRBase Tracker:MI0009767

Mature sequence bta-miR-196a

• Accession: MIMAT0009255
• Sequence: 24 - uagguaguuucauguuguuggg - 45
• Deep sequencing: 29744 reads, 57 experiments
• Evidence: by similarity; MI0010360
• Predicted targets:
  • TargetScanVert:bta-miR-196a

References

1. PMID:18215311 "miRNAminer: a tool for homologous microRNA gene search" Artzi S, Kiezun A, Shomron N BMC Bioinformatics. 9:39(2008).
2. PMID:18945293 "Annotation of 390 bovine miRNA genes by sequence similarity with other species" Strozzi F, Mazza R, Malinverni R, Williams JL Anim Genet. 40:125(2009).