Stem-loop bta-mir-196b

Accession

MI0009768

Description

Bos taurus bta-mir-196b precursor miRNA

Literature search

14 open access papers mention bta-mir-196b
(43 sentences)

Sequence

8531 reads, 201 reads per million, 45 experiments

aacuggucggugauuUAGGUAGUUUCCUGUUGUUGGGAuccaccuuucucucgacagcacgacacugccuucauuacuucaguug
((((((..((((((..(((((((.((.(((((((((((..........))))))))))).)).)))))))..)))))))))))).

Structure

-      uc      uU       U  C           ucca 
 aacugg  ggugau  AGGUAGU UC UGUUGUUGGGA    c
 ||||||  ||||||  ||||||| || |||||||||||     
 uugacu  ucauua  uccguca ag acgacagcucu    c
g      --      cu       c  c           cuuu 

Annotation confidence Not enough data

Genome context

chr4: 69566921-69567005 [+]

Mature bta-miR-196b

• Accession: MIMAT0009256
• Description: Bos taurus bta-miR-196b mature miRNA
• Sequence: 16 - UAGGUAGUUUCCUGUUGUUGGGA - 38
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125