Stem-loop bta-mir-216a

Accession

MI0009777

Description

Bos taurus bta-mir-216a precursor miRNA

Gene family

MIPF0000054; mir-216

Literature search

2 open access papers mention bta-mir-216a
(5 sentences)

Sequence

98 reads, 10 reads per million, 29 experiments

gauggcugugaguuggcuUAAUCUCAGCUGGCAACUGUGAgauguucauacaguccuccacaguggucucugggauuaugcuaaacagagcaaucuccuugcccucaug
(((.(((.((..(((((.(((((((((..(((.((((((((.(((....)))...)).)))))).))).))))))))).))))).)).))).)))..............

Structure

--------------   g   g  ag     u         CU   A      -  --a   u 
              gau gcu ug  uuggc UAAUCUCAG  GGC ACUGUG Ag   ugu c
              ||| ||| ||  ||||| |||||||||  ||| |||||| ||   |||  
              cua cga ac  aaucg auuaggguc  cug ugacac uc   aca a
guacucccguuccu   a   g  -a     u         -u   g      c  cug   u 

Annotation confidence Not enough data

Genome context

chr11: 38653549-38653657 [-]

Mature bta-miR-216a

• Accession: MIMAT0009265
• Description: Bos taurus bta-miR-216a mature miRNA
• Sequence: 19 - UAAUCUCAGCUGGCAACUGUGA - 40
• Evidence: not_experimental

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125