miRBase entry: bta-mir-218-1

Stem-loop bta-mir-218-1


Accession
MI0009780
Description
Bos taurus bta-mir-218-1 precursor miRNA
Gene family
MIPF0000026; mir-218

Literature search
5 open access papers mention bta-mir-218-1
(7 sentences)

Sequence

4563 reads, 65 reads per million, 64 experiments
gugguuauguagcgagauuuucugUUGUGCUUGAUCUAACCAUGUGguugccagguaugaguaaaacaugguuccgucaagcaccauggaacgucacgcagcuuucuaca
((((....((.(((.(((.((((((.(((((((((..((((((((..((((((....)).)))).))))))))..))))))))).)))))).))).))).))...)))).

Structure
-    uuau  a   a   u      U         CU        Gg    -  g 
 gugg    gu gcg gau uucugU GUGCUUGAU  AACCAUGU  uugc ca g
 ||||    || ||| ||| |||||| |||||||||  ||||||||  |||| ||  
 cauc    cg cgc cug aaggua cacgaacug  uugguaca  aaug gu u
a    -uuu  a   a   c      c         cc        -a    a  a 


Annotation confidence Not enough data
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Genome context
chr6: 41756487-41756596 [+]

Database links

Mature bta-miR-218

Accession MIMAT0003798
Description Bos taurus bta-miR-218 mature miRNA
Sequence 25 - UUGUGCUUGAUCUAACCAUGUG - 46
Evidence experimental
cloned [1,3-4]

References

  1. PubMed ID: 17105755
    Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
    "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
    "Physiol Genomics (2007) 29:35-43

  2. PubMed ID: 19267191
    Identification and characteristics of cattle microRNAs by homology searching and small RNA cloning
    "Long JE, Chen HX"
    "Biochem Genet (2009) 47:329-343

  3. PubMed ID: 19758457
    Characterization of bovine miRNAs by sequencing and bioinformatics analysis
    Jin W, Grant JR, Stothard P, Moore SS, Guan LL
    BMC Mol Biol (2009) 10:90

  4. PubMed ID: 18945293
    Annotation of 390 bovine miRNA genes by sequence similarity with other species
    "Strozzi F, Mazza R, Malinverni R, Williams JL"
    "Anim Genet (2009) 40:125