miRBase entry: bta-mir-301b

Stem-loop bta-mir-301b


Accession
MI0009790
Description
Bos taurus bta-mir-301b precursor miRNA
Gene family
MIPF0000034; mir-130

Literature search
2 open access papers mention bta-mir-301b
(3 sentences)

Sequence

1789 reads, 30 reads per million, 65 experiments
uccugcuggccgcaggugcucugacgagguugcacuacugugcuuugaggagCAGUGCAAUGAUAUUGUCAAAGCAUccgggaccagccuuggag
(((.(((((((.(.((((((.((((((.((((((((.....((((....))))))))))))....)))))).)))))).))).)))))...))).

Structure
-   --u     -  g a      c      ---g        acugu    u 
 ucc   gcugg cc c ggugcu ugacga    guugcacu     gcuu g
 |||   ||||| || | |||||| ||||||    ||||||||     ||||  
 agg   cgacc gg g cUACGA ACUGUU    UAACGUGA     Cgag a
g   uuc     a  - c      A      AUAG        -----    g 


Annotation confidence Not enough data
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Genome context
chr17: 74305850-74305944 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from bta-mir-301b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-301b

Accession MIMAT0009277
Description Bos taurus bta-miR-301b mature miRNA
Sequence 53 - CAGUGCAAUGAUAUUGUCAAAGCAU - 77
Evidence not_experimental

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39

  2. PubMed ID: 18945293
    Annotation of 390 bovine miRNA genes by sequence similarity with other species
    "Strozzi F, Mazza R, Malinverni R, Williams JL"
    "Anim Genet (2009) 40:125