Stem-loop sequence bta-mir-302a

Accession

MI0009791 (change log)

Description

Bos taurus miR-302a stem-loop

Gene family

MIPF0000071; mir-302

Literature search

5 open access papers mention bta-mir-302a
(11 sentences)

Stem-loop

   c   c    u         u           aua 
5'  cca cacu aaacgugga guacuugcuuu   g
    ||| |||| ||||||||| |||||||||||   c
3'  ggu guga uuuguaccu cgugaaugaaa   u
   -   a    u         u           aaa 

Deep sequencing

5 reads, 0 reads per million, 5 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chr6: 14305767-14305836 [+]
• Overlapping transcripts:

  antisense

  ENSBTAT00000012693 ; LARP7-201; intron 8

Clustered miRNAs

< 10kb from bta-mir-302a

• bta-mir-302b: chr6: 14305231-14305305 [+]
• bta-mir-302c: chr6: 14305374-14305441 [+]
• bta-mir-302a: chr6: 14305767-14305836 [+]
• bta-mir-302d: chr6: 14305944-14306013 [+]
• bta-mir-367: chr6: 14306070-14306137 [+]

Database links

• EntrezGene:MIR302A
• miRBase Tracker:MI0009791

Mature sequence bta-miR-302a

• Accession: MIMAT0009278
• Sequence: 46 - aagugcuuccauguuuuaguga - 67
• Deep sequencing: 5 reads, 5 experiments
• Evidence: by similarity; MI0010350
• Predicted targets:
  • TargetScanVert:bta-miR-302a

References

1. PMID:18215311 "miRNAminer: a tool for homologous microRNA gene search" Artzi S, Kiezun A, Shomron N BMC Bioinformatics. 9:39(2008).
2. PMID:18945293 "Annotation of 390 bovine miRNA genes by sequence similarity with other species" Strozzi F, Mazza R, Malinverni R, Williams JL Anim Genet. 40:125(2009).